Apple Crisp Mini Cheesecakes

Featured in Sweet Moments of Joy.

Apple Crisp Mini Cheesecakes are the perfect fall-inspired treat packed with warm flavors of cinnamon, nutmeg, and tangy apples. Each mini cheesecake features a graham cracker crust, luscious cream cheese filling, spiced apple topping, and a crumbly cinnamon oat layer. These bite-sized delights are baked to perfection and finished with caramel drizzle, making them a crowd-pleaser for gatherings or a cozy dessert at home. Simple yet indulgent, they combine the richness of cheesecake with the comforting essence of apple crisp.

Barbara Chef
Updated on Sat, 03 May 2025 13:56:25 GMT
A dessert with a white whipped cream topping. Pin it
A dessert with a white whipped cream topping. | gracefulflavors.com

This miniature apple crisp cheesecake recipe combines two classic desserts into one irresistible treat. The buttery graham cracker base supports a creamy cheesecake layer topped with spiced apples and a golden oat crumble. Perfect for fall gatherings when you want something impressive without making a full-sized cheesecake.

I first made these for a fall potluck when I couldn't decide between bringing apple crisp or cheesecake. The combination was such a hit that they've become my signature dessert whenever the leaves start changing color.

Ingredients

  • Graham cracker crumbs: Create a crunchy base that complements the creamy cheesecake; look for prepackaged crumbs or crush your own in a food processor
  • Cream cheese: Forms the velvety middle layer; use full-fat cream cheese at room temperature for the smoothest texture
  • Fresh apples: Provide natural sweetness and texture; Granny Smith or Honeycrisp work beautifully here
  • Warm spices: Like cinnamon and nutmeg bring quintessential fall flavor to every layer of this dessert
  • Quick cooking oats: Create the perfect crispy topping; regular rolled oats will work but quick oats give a better texture
  • Caramel sauce: Adds a final touch of indulgence; homemade is wonderful but store-bought works perfectly too

Step-by-Step Instructions

Prepare The Crust:
Mix graham cracker crumbs with sugar, cinnamon, and melted butter until the mixture resembles wet sand. Press firmly into paper liners creating an even base. The back of a measuring spoon works perfectly for this task. Chill the crusts while preparing the other components to help them set.
Make The Crumb Topping:
Combine dry ingredients first, then pour in the melted butter stirring until you get coarse crumbs that hold together when squeezed. The secret is not overmixing; you want distinct clumps rather than a uniform mixture. Refrigerate to firm up the butter which will help create those irresistible crispy bits.
Prepare Apple Filling:
Toss the peeled and finely diced apples with lemon juice to prevent browning then mix with spices, brown sugar, and cornstarch. The cornstarch is crucial here as it will thicken the apple juices during baking, preventing a soggy cheesecake. Cut the apples into small, uniform pieces for even cooking.
Mix Cheesecake Filling:
Beat the softened cream cheese until completely smooth before adding sugar, vanilla, and flour. The flour stabilizes the filling and prevents cracking. Add the egg last and mix just until incorporated; overbeating will incorporate too much air, leading to cracks and uneven texture.
Layer And Assemble:
Spoon cheesecake filling over chilled crusts followed by the apple mixture. Press the apples down gently to create a level surface, then generously top with the crumb mixture, covering completely. The layering technique is important for ensuring distinct flavors in every bite.
Bake To Perfection:
Bake at a moderate 325°F for about 30 minutes or until the edges are set but centers still have a slight jiggle. The low temperature prevents the cheesecake from puffing up and cracking. Look for golden brown crumb topping as your visual cue for doneness.
A dessert with a white whipped cream topping. Pin it
A dessert with a white whipped cream topping. | gracefulflavors.com

You Must Know

  • These mini cheesecakes freeze beautifully for up to 3 months; just thaw in the refrigerator overnight
  • No springform pan needed, making these much less fussy than traditional cheesecake
  • Can be made a day ahead; perfect for entertaining

The cornstarch in the apple filling is my secret weapon for perfect texture. I learned this trick from my grandmother who always added it to her apple pies. It ensures the filling gets thick and jammy rather than watery, which would make the cheesecake soggy. Every time I make these I think of her kitchen filled with the aroma of baking apples and cinnamon.

Storage Tips

These mini cheesecakes will stay fresh in an airtight container in the refrigerator for up to 5 days. The flavor actually improves after a day as the spices meld together. For longer storage, wrap each cooled cheesecake individually in plastic wrap then place in a freezer bag. When ready to enjoy, thaw overnight in the refrigerator, then bring to room temperature for about 30 minutes before serving for the best texture and flavor.

Make Ahead Options

You can prepare components separately to save time on baking day. The graham cracker crust and crumb topping can be made up to 3 days in advance and stored in the refrigerator. The apple filling can be prepared a day ahead though it might discolor slightly; this won't affect the taste. Assemble and bake the cheesecakes the day before your event, allowing them to chill overnight which improves their flavor and makes them easier to serve.

A dessert with a white whipped cream topping. Pin it
A dessert with a white whipped cream topping. | gracefulflavors.com

Serving Suggestions

While these cheesecakes are delicious on their own, they become truly spectacular with a few thoughtful accompaniments. Drizzle warm caramel sauce over the top just before serving or create a dessert bar with various toppings like whipped cream, crushed toffee bits, or toasted pecans. For an elegant presentation, place each mini cheesecake on a small dessert plate with a mint leaf and a thin apple slice fanned out alongside. Serve slightly chilled but not cold for the best flavor experience.

Frequently Asked Questions

→ Can I use a different type of crust?

Yes, you can substitute the graham cracker crust with crushed digestive biscuits, gingersnaps, or even a thin layer of store-bought pie crust.

→ How do I store the mini cheesecakes?

Store the baked and cooled mini cheesecakes in an airtight container in the refrigerator for up to 4 days. Add caramel sauce just before serving.

→ Can I freeze these mini cheesecakes?

Yes, these mini cheesecakes can be frozen. Wrap them individually and store in an airtight container for up to 3 months. Thaw in the refrigerator overnight before serving.

→ What type of apples work best for this recipe?

Granny Smith apples are a great choice for their tartness, but you can also use Honeycrisp or Fuji for a sweeter flavor.

→ Is it necessary to drizzle caramel sauce?

No, the caramel sauce is optional, but it adds a delicious sweetness and pairs wonderfully with the spiced apple flavor.

→ Can I make this recipe gluten-free?

Yes, simply use gluten-free graham crackers and gluten-free oats for the crust and topping to adapt this recipe for a gluten-free diet.

Apple Crisp Mini Cheesecakes

Delicious apple crisp mini cheesecakes with creamy base and cinnamon oat topping.

Prep Time
20 Minutes
Cook Time
30 Minutes
Total Time
50 Minutes
By: Barbara


Difficulty: Intermediate

Cuisine: American

Yield: 9 Servings (9 cupcakes)

Dietary: Vegetarian

Ingredients

→ Graham Cracker Crust

01 3/4 cup graham cracker crumbs
02 1 and 1/2 tablespoons sugar
03 1/2 teaspoon cinnamon
04 3 tablespoons unsalted butter, melted

→ Crumb Topping

05 1/3 cup all-purpose flour
06 1/3 cup light brown sugar
07 1/3 cup quick-cooking oats
08 3/4 teaspoon cinnamon
09 1/8 teaspoon nutmeg
10 2 and 1/2 tablespoons unsalted butter, melted

→ Apple Filling

11 2 medium-small apples, peeled and chopped finely
12 2 teaspoons freshly squeezed lemon juice
13 1 and 1/2 teaspoons cinnamon
14 1/4 teaspoon nutmeg
15 2 tablespoons light brown sugar
16 1 and 1/2 teaspoons cornstarch

→ Cheesecake Filling

17 10 oz cream cheese, softened
18 6 tablespoons sugar
19 1 and 1/2 teaspoons vanilla extract
20 2 teaspoons all-purpose flour
21 1 egg

→ Serving (optional)

22 Caramel sauce, for serving

Instructions

Step 01

Line a standard cupcake pan with paper liners. This recipe yields 9 cupcakes.

Step 02

Preheat the oven to 325°F (160°C).

Step 03

Using a fork, stir together graham cracker crumbs with cinnamon and sugar. Add melted butter and mix well. Press almost 2 tablespoons of the mixture into the bottom of each paper liner and refrigerate.

Step 04

In a bowl, combine all-purpose flour, light brown sugar, quick-cooking oats, cinnamon, and nutmeg. Add melted butter and mix to form coarse crumbs. Refrigerate until needed.

Step 05

In a mixing bowl, beat softened cream cheese with sugar, vanilla, and flour until smooth. Add the egg and mix until just combined. Divide the cheesecake filling evenly over the prepared crusts, filling each cup about 2/3 full.

Step 06

Toss the chopped apples with lemon juice in a small bowl. Add light brown sugar, cornstarch, cinnamon, and nutmeg, and mix well. Spoon the apple mixture over the cheesecake filling, filling almost to the top of each cup, and gently press the apples with your palm.

Step 07

Generously sprinkle the prepared cinnamon oat crumbs over the top of each cupcake.

Step 08

Bake in the preheated oven for about 28-30 minutes.

Step 09

Let the cheesecakes cool in the pan for 30 minutes, then remove them from the pan and transfer to the refrigerator.

Step 10

Before serving, drizzle each cheesecake with caramel sauce.

Tools You'll Need

  • Standard cupcake pan
  • Paper cupcake liners
  • Mixing bowls
  • Fork
  • Oven

Allergy Information

Please check ingredients for potential allergens and consult a health professional if in doubt.
  • Contains dairy
  • Contains eggs
  • Contains gluten

Nutrition Facts (Per Serving)

It is important to consider this information as approximate and not to use it as definitive health advice.
  • Calories: 230.5
  • Total Fat: 11 g
  • Total Carbohydrate: 28.3 g
  • Protein: 3.2 g