Blueberry Lime Cheesecake Cupcakes

Featured in Sweet Moments of Joy.

Cheesecake-filled cupcakes with blueberry lime glaze. Takes 70 minutes to make. Combines classic vanilla cake with tangy cheesecake and fresh fruit topping.
Barbara Chef
Recipe by Barbara
Updated on Tue, 18 Feb 2025 16:38:09 GMT
A cupcake with blueberries and cream on top. Pin it
A cupcake with blueberries and cream on top. | gracefulflavors.com

These blueberry lime cheesecake cupcakes combine the best of two dessert worlds - tender cupcakes and creamy cheesecake - with a perfect balance of sweet berries and bright citrus. Each bite delivers waves of flavor: first the rich cheesecake, then the burst of lime, followed by sweet-tart blueberries. It's like summer captured in a cupcake.

Last weekend, I brought these to a garden party, and my friend who "doesn't do fruity desserts" asked for the recipe. The way the lime cuts through the rich cheesecake while the blueberries add natural sweetness creates something truly magical.

Essential Ingredients

  • Cream Cheese: Must be room temperature for smoothest results
  • Fresh Limes: Both zest and juice make a difference
  • Blueberries: Fresh or frozen work equally well
  • Quality Vanilla: Pure extract enhances all flavors
  • Fresh Eggs: Room temperature for best incorporation
  • Butter: Unsalted gives better control
A cupcake with blueberries and a lime wedge on top. Pin it
A cupcake with blueberries and a lime wedge on top. | gracefulflavors.com

Detailed Instructions

Perfect the Base:
Cream butter and sugar until truly light. Add eggs one at a time. Mix just until ingredients combine. Fill liners consistently.
Create the Cheesecake Layer:
Beat cream cheese until completely smooth. Add sugar gradually to prevent lumps. Incorporate lime zest and juice evenly. Layer carefully over cake batter.
Master the Glaze:
Cook berries until they burst naturally. Add lime juice gradually to taste. Watch for proper thickening. Strain for smoothest results.
Perfect the Assembly:
Let cupcakes cool completely. Apply glaze at right temperature. Drizzle with consistent motion. Garnish thoughtfully.
Finish with Care:
Add final zest just before serving. Keep chilled until presentation. Garnish with fresh berries. Let sit briefly before serving.

This recipe evolved from my love of cheesecake but desire for something more portable and summer-friendly. After experimenting with different fruit and citrus combinations, the blueberry-lime pairing proved to be the perfect match of sweet and tart.

A cupcake with blueberries and a lime wedge on top. Pin it
A cupcake with blueberries and a lime wedge on top. | gracefulflavors.com

Making it Your Own

Through countless batches, I've learned that success lies in the details - the temperature of your ingredients, the timing of your assembly, and most importantly, the balance of your flavors. I particularly love how this recipe welcomes variations - sometimes I'll add extra lime zest, other times I'll swirl the blueberry glaze into the cheesecake layer.

After perfecting this recipe, I've found it's more than just a dessert - it's a perfect way to celebrate summer flavors in an elegant package. Whether served at a picnic or fancy dinner party, they never fail to impress. The combination of creamy cheesecake, bright lime, and sweet berries proves that sometimes the best desserts come in small packages.

Recipe Tips & Questions

→ Can I use frozen blueberries?
Yes, frozen blueberries work well for the glaze. No need to thaw first.
→ Why does the cream cheese need to be softened?
Softened cream cheese blends smoothly and prevents lumps in the filling.
→ Can I make these ahead?
Yes, make up to 2 days ahead. Store in fridge and add glaze before serving.
→ How do I know when they're done?
Toothpick inserted in center should come out clean, and tops should spring back when touched.
→ Can I freeze these cupcakes?
Yes, freeze unfrosted cupcakes up to 2 months. Thaw and add glaze before serving.

Blueberry Lime Cheesecake Cupcakes

Vanilla cupcakes filled with lime-scented cheesecake and topped with fresh blueberry lime glaze. A perfect balance of flavors in every bite.

Prep Time
30 Minutes
Cook Time
40 Minutes
Total Time
70 Minutes
Recipe by: Barbara

Recipe Type: Irresistible Desserts

Skill Level: Moderate

Style of Cooking: American

Makes: 4 Serves

Dietary Notes: Vegetarian

What You'll Need

→ Cupcake Base

01 1 1/2 cups all-purpose flour
02 1 teaspoon baking powder
03 1/2 teaspoon salt
04 1/2 cup unsalted butter, softened
05 1 cup granulated sugar
06 2 large eggs
07 1 teaspoon vanilla extract
08 1/2 cup milk

→ Cheesecake Filling

09 8 ounces cream cheese, softened
10 1/4 cup granulated sugar
11 1 large egg
12 Zest and juice of 1 lime

→ Blueberry Lime Glaze

13 1 cup fresh blueberries
14 1/4 cup granulated sugar
15 1 tablespoon lime juice
16 1 tablespoon cornstarch
17 2 tablespoons water

Let's Cook!

Step 01

Preheat oven to 350°F. Line cupcake pan with liners. Mix flour, baking powder, and salt

Step 02

Cream butter and sugar. Add eggs, vanilla, and milk. Gradually mix in dry ingredients

Step 03

Beat cream cheese, sugar, egg, lime zest and juice until smooth

Step 04

Fill liners halfway with batter, top with cheesecake mixture. Bake 20-25 minutes until done

Step 05

Cook blueberries, sugar, lime juice, cornstarch, and water until thickened. Cool and drizzle over cupcakes

Cook's Notes

  1. Let cupcakes cool completely before glazing
  2. Cream cheese should be room temperature
  3. Glaze should be cooled before using

Kitchen Equipment Needed

  • Cupcake pan
  • Cupcake liners
  • Mixing bowls
  • Small saucepan

Allergy Notes

Always check ingredients carefully for allergens. When in doubt, please consult your healthcare provider.
  • Contains dairy
  • Contains eggs
  • Contains wheat

Nutrition Information (Per Serving)

These values are estimates and should be used as a general guide.
  • Calories: 300
  • Total Fat: ~
  • Total Carbohydrate: ~
  • Protein: ~